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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18336186_18336881_F

Intron Information:

Intron Rank:
149751
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
18336186 - 18336881
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAGAATAA
5'SS Class:
weak_major
3'SS Sequence:
CATTCTACTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53
0.07
1.1
51.9
35.8
Major BPS
100
1.24
0.5
100
0
Major PPT
65.5
0.35
1.1
65.3
34.8
Minor 5ss
36.5
-1.5
3.4
42.1
46
Minor BPS
50.3
0.09
1.8
70.99
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030569
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045781
18334234 - 18338202
3969