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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18342024_18346129_F

Intron Information:

Intron Rank:
149243
Intron Class:
major
Intron Phase:
Intron Coordinates:
18342024 - 18346129
Intron Length:
4106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCCT
5'SS Class:
strong_major
3'SS Sequence:
TATCTGCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATGTCTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
77.3
37.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.9
0.67
0.9
72.7
37.3
Minor 5ss
36.9
-1.5
2.9
51.8
44.6
Minor BPS
62.3
0.46
1.5
76.27
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030257
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041636
18341502 - 18352770
11269