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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_1851362_1852514_F

Intron Information:

Intron Rank:
132055
Intron Class:
major
Intron Phase:
Intron Coordinates:
1851362 - 1852514
Intron Length:
1153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTCCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
75.7
0.58
0.9
70.6
36.2
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
68.1
0.65
1.8
88.32
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020946
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047425
1850893 - 1852688
1796