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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18644485_18644704_R

Intron Information:

Intron Rank:
27
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18644485 - 18644704
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAGGTAGC
5'SS Class:
weak_major
3'SS Sequence:
TATGCTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGACAA
U12 Branch Point Sequence:
TATGCTTCCACA
Flanking Amino Acid:
SIQPPRDMPALHALMCQHAV
Intron Amino Acid Position:
4485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.4
58.4
46.6
Major BPS
50.6
0.02
1.2
59
38
Major PPT
75.3
0.57
0.9
68.9
36.8
Minor 5ss
36.5
-1.5
3
49.4
40.3
Minor BPS
48.2
-0.1
2
64.37
42.3

Associated Gene:

Gene:
FAT1
Ensembl Gene ID:
ENSAPLG00000006720
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037595
18643981 - 18744538
100558