About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18644974_18645938_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18644974 - 18645938
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACTTCT
5'SS Class:
major
3'SS Sequence:
GTTCACTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCTTTTTTAAAA
Flanking Amino Acid:
FAVPDLSNSRGYHWDTSDWM
Intron Amino Acid Position:
4577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.1
77.5
33.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81
0.7
0.9
77.2
36.7
Minor 5ss
42.9
-0.8
2.8
59.5
45
Minor BPS
64.8
0.46
1.4
68.55
37.9

Associated Gene:

Gene:
FAT1
Ensembl Gene ID:
ENSAPLG00000006720
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041409
18643981 - 18744538
100558
ENSAPLT00000037595
18643981 - 18744538
100558
ENSAPLT00000036488
18643981 - 18751117
107137
ENSAPLT00000042875
18643981 - 18752242
108262
ENSAPLT00000042765
18643981 - 18751117
107137