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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18661825_18663880_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18661825 - 18663880
Intron Length:
2056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTAA
5'SS Class:
strong_major
3'SS Sequence:
TATACATTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TATACATTTATA
Flanking Amino Acid:
SKGNYSVIIQENKPIGFSVL
Intron Amino Acid Position:
3475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
33.5
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
73.1
0.52
0.9
66.2
39.4
Minor 5ss
42.5
-0.8
3
55.3
48.9
Minor BPS
50.4
0.01
1.9
66.69
39.5

Associated Gene:

Gene:
FAT1
Ensembl Gene ID:
ENSAPLG00000006720
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036488
18643981 - 18751117
107137
ENSAPLT00000042875
18643981 - 18752242
108262
ENSAPLT00000032133
18649683 - 18751117
101435
ENSAPLT00000042765
18643981 - 18751117
107137
ENSAPLT00000007052
18643981 - 18744538
100558
ENSAPLT00000041409
18643981 - 18744538
100558
ENSAPLT00000037595
18643981 - 18744538
100558
ENSAPLT00000048067
18643981 - 18751117
107137