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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18664491_18664905_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18664491 - 18664905
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTACGTATT
5'SS Class:
major
3'SS Sequence:
TAATATTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACTGTTTTAAAT
Flanking Amino Acid:
DAVLEQSVITVMADDADGPS
Intron Amino Acid Position:
3381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
76.1
39.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69
0.43
0.9
66.9
39.6
Minor 5ss
42.8
-0.8
3.1
65.3
39.8
Minor BPS
58.2
0.34
1.5
70.46
41

Associated Gene:

Gene:
FAT1
Ensembl Gene ID:
ENSAPLG00000006720
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036488
18643981 - 18751117
107137
ENSAPLT00000042875
18643981 - 18752242
108262
ENSAPLT00000032133
18649683 - 18751117
101435
ENSAPLT00000042765
18643981 - 18751117
107137
ENSAPLT00000007052
18643981 - 18744538
100558
ENSAPLT00000041409
18643981 - 18744538
100558
ENSAPLT00000037595
18643981 - 18744538
100558
ENSAPLT00000048067
18643981 - 18751117
107137