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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18670460_18671856_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18670460 - 18671856
Intron Length:
1397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCACA
5'SS Class:
strong_major
3'SS Sequence:
TAAAATCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAATTTTAAAAT
Flanking Amino Acid:
ANDNSPVCEKALYTDTVPED
Intron Amino Acid Position:
3050

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.6
40.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.5
0.48
1
66.7
44.1
Minor 5ss
38.3
-1.3
3.1
49.3
46.7
Minor BPS
49.5
0.04
1.7
65.16
39.2

Associated Gene:

Gene:
FAT1
Ensembl Gene ID:
ENSAPLG00000006720
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007052
18643981 - 18744538
100558
ENSAPLT00000041409
18643981 - 18744538
100558
ENSAPLT00000037595
18643981 - 18744538
100558
ENSAPLT00000048067
18643981 - 18751117
107137
ENSAPLT00000036488
18643981 - 18751117
107137
ENSAPLT00000042875
18643981 - 18752242
108262
ENSAPLT00000032133
18649683 - 18751117
101435
ENSAPLT00000042765
18643981 - 18751117
107137