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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18672054_18672696_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18672054 - 18672696
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTCTTTAATT
Flanking Amino Acid:
ANRQVSYYITGGDPLGQFAV
Intron Amino Acid Position:
2984

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.1
81.8
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
80.4
0.68
0.8
78.5
34.3
Minor 5ss
45.7
-0.5
2.9
67.7
43.2
Minor BPS
83.9
1.14
1
91.43
32.3

Associated Gene:

Gene:
FAT1
Ensembl Gene ID:
ENSAPLG00000006720
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036488
18643981 - 18751117
107137
ENSAPLT00000042875
18643981 - 18752242
108262
ENSAPLT00000032133
18649683 - 18751117
101435
ENSAPLT00000042765
18643981 - 18751117
107137
ENSAPLT00000007052
18643981 - 18744538
100558
ENSAPLT00000041409
18643981 - 18744538
100558
ENSAPLT00000037595
18643981 - 18744538
100558
ENSAPLT00000048067
18643981 - 18751117
107137