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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18679540_18686556_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18679540 - 18686556
Intron Length:
7017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGAC
5'SS Class:
major
3'SS Sequence:
TGTATCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TATTGTATCATT
Flanking Amino Acid:
TDGTRSISTQVYIKVIDTNN
Intron Amino Acid Position:
1466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.3
35.4
Major BPS
75.8
0.64
1
65.8
41
Major PPT
78.4
0.64
0.9
74.6
39.8
Minor 5ss
29.6
-2.3
3.5
40.7
45.8
Minor BPS
44.8
-0.3
2.3
69.44
42.1

Associated Gene:

Gene:
FAT1
Ensembl Gene ID:
ENSAPLG00000006720
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037595
18643981 - 18744538
100558
ENSAPLT00000048067
18643981 - 18751117
107137
ENSAPLT00000036488
18643981 - 18751117
107137
ENSAPLT00000042875
18643981 - 18752242
108262
ENSAPLT00000032133
18649683 - 18751117
101435
ENSAPLT00000042765
18643981 - 18751117
107137
ENSAPLT00000007052
18643981 - 18744538
100558
ENSAPLT00000041409
18643981 - 18744538
100558