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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18744539_18750653_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18744539 - 18750653
Intron Length:
6115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGGCG
5'SS Class:
major
3'SS Sequence:
TCTCTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TAGGTCTTAATT
Flanking Amino Acid:
AGLVPAPRALRFFFVIAAMG
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
58
38.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
85.7
0.8
0.8
83.9
31.1
Minor 5ss
22.7
-3.1
3.4
28.9
43.8
Minor BPS
67.7
0.64
1.4
76.21
41.1

Associated Gene:

Gene:
FAT1
Ensembl Gene ID:
ENSAPLG00000006720
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042765
18643981 - 18751117
107137
ENSAPLT00000036488
18643981 - 18751117
107137
ENSAPLT00000032133
18649683 - 18751117
101435
ENSAPLT00000048067
18643981 - 18751117
107137