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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18798039_18808721_F

Intron Information:

Intron Rank:
126622
Intron Class:
major
Intron Phase:
Intron Coordinates:
18798039 - 18808721
Intron Length:
10683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCAATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCATTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
88.9
24.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
74.8
0.56
0.9
71.7
38.3
Minor 5ss
37.5
-1.4
2.8
51.2
45.3
Minor BPS
76.8
0.92
1.1
83.9
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018247
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032693
18797777 - 18812285
14509