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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18833961_18836025_F

Intron Information:

Intron Rank:
150907
Intron Class:
major
Intron Phase:
Intron Coordinates:
18833961 - 18836025
Intron Length:
2065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GATTCCAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.9
0.67
1
77.2
36.9
Minor 5ss
44.1
-0.6
2.9
58
40.8
Minor BPS
54.9
0.23
1.9
75.11
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031081
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038367
18833777 - 18836124
2348