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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18833961_18901134_F

Intron Information:

Intron Rank:
150903
Intron Class:
major
Intron Phase:
Intron Coordinates:
18833961 - 18901134
Intron Length:
67174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TATTCTCAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTATTCTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
67.2
0.39
1
63.8
36.8
Minor 5ss
44.1
-0.6
2.9
58
40.8
Minor BPS
65.6
0.57
1.6
82.48
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031081
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031435
18826342 - 18901229
74888
ENSAPLT00000024127
18832201 - 18901229
69029