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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_18850458_18852683_F

Intron Information:

Intron Rank:
127527
Intron Class:
major
Intron Phase:
Intron Coordinates:
18850458 - 18852683
Intron Length:
2226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTTATTTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.9
35.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
96.2
1.04
0.5
91.9
19.1
Minor 5ss
37
-1.5
3.2
47.6
48.1
Minor BPS
59.8
0.39
1.6
76.2
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018786
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033999
18850290 - 18853557
3268