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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19013933_19033568_R

Intron Information:

Intron Rank:
139577
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
19013933 - 19033568
Intron Length:
19636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTTAAGAAA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.3
0.01
1.2
54.4
38.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
100
1.12
0.4
100
0
Minor 5ss
29.5
-2.4
3
37.5
41.1
Minor BPS
59.9
0.31
1.8
75.92
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018492
19013811 - 19048645
34835
ENSAPLT00000046496
19013811 - 19035598
21788
ENSAPLT00000041541
19013811 - 19048645
34835