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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19089067_19089491_F

Intron Information:

Intron Rank:
133018
Intron Class:
major
Intron Phase:
Intron Coordinates:
19089067 - 19089491
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTAAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCCTTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.5
0.49
1.1
74.9
32.4
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
62.5
0.39
1.4
69.31
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021541
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032160
19085090 - 19090595
5506