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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19296978_19362756_R

Intron Information:

Intron Rank:
147496
Intron Class:
major
Intron Phase:
Intron Coordinates:
19296978 - 19362756
Intron Length:
65779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATTCTGTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
88.5
0.87
0.8
81.2
36.5
Minor 5ss
38.1
-1.3
3
49.1
46.7
Minor BPS
47.7
-0
2.2
71.06
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026700
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046896
19296606 - 19370179
73574