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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_1973810_1976557_R

Intron Information:

Intron Rank:
134426
Intron Class:
major
Intron Phase:
Intron Coordinates:
1973810 - 1976557
Intron Length:
2748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGGAG
5'SS Class:
major
3'SS Sequence:
AATTTGACCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTATTTTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
57.3
42
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
62.8
0.29
0.9
55.7
39.2
Minor 5ss
26.5
-2.7
3.7
36.3
48.1
Minor BPS
60.3
0.4
1.6
78.04
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019591
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033732
1973330 - 1977066
3737