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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19800210_19800428_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19800210 - 19800428
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
GTGTGCCCACCT
Flanking Amino Acid:
KLVLKGAKEKSKKKHKEKKR
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
84
0.76
0.7
79.7
25.7
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
40.7
-0.6
2.3
61.62
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007785
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008092
19799194 - 19807166
7973