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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19802232_19803154_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19802232 - 19803154
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTTC
5'SS Class:
major
3'SS Sequence:
TTTCATTCCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TAATACTTAATG
Flanking Amino Acid:
GLFTLGAPHKGDEGPSPPEQ
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
76.1
34
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.3
0.48
1
75.7
32.8
Minor 5ss
47.2
-0.3
2.4
61.9
42.9
Minor BPS
66.2
0.37
1.6
66.88
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007785
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008092
19799194 - 19807166
7973