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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19803520_19803893_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19803520 - 19803893
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
AACTCCTTATGC
Flanking Amino Acid:
REQWEPVFQDKKMALLAANS
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
75.2
35.8
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
85.3
0.79
0.8
80.7
31.4
Minor 5ss
43
-0.8
2.8
57.2
40.7
Minor BPS
52.7
0.06
1.9
61.72
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007785
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008092
19799194 - 19807166
7973