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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19803999_19804616_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19803999 - 19804616
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTGT
5'SS Class:
major
3'SS Sequence:
TCTCAATGACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTTCTCAATG
Flanking Amino Acid:
KTAGEEEMIKIRTCAERETK
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
71.6
40.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
58.6
0.19
1
52
41.5
Minor 5ss
45.6
-0.5
2.9
65.6
45.5
Minor BPS
62.9
0.27
1.6
66.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007785
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008092
19799194 - 19807166
7973