Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19804709_19805320_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19804709 - 19805320

Intron Length:

612

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTATGTAGT

5'SS Class:

major

3'SS Sequence:

TTTCCCTTTATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TTTCCCTTTATA

Flanking Amino Acid:

GNVKQCEINYVKKFQSFQDK

Intron Amino Acid Position:

208

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.6

0.41

1.1

67.4

43.5

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

85.2

0.79

0.6

80.4

24.9

Minor 5ss

45.5

-0.5

2.6

60.3

44.2

Minor BPS

71.1

0.66

1.6

81.07

33.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007785

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008092

19799194 - 19807166

7973