Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19805432_19806302_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

19805432 - 19806302

Intron Length:

871

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTCTAT

5'SS Class:

weak_major

3'SS Sequence:

TCTTTCCACACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

GTTTCATTACTC

Flanking Amino Acid:

EGTFHETLLDRRAKVKADRY

Intron Amino Acid Position:

245

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

69.5

37.4

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

77.9

0.63

0.8

73.1

30.8

Minor 5ss

55.9

0.2

2.4

73.2

43.6

Minor BPS

58.9

0.26

1.9

72.34

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007785

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008092

19799194 - 19807166

7973