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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19815971_19816161_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19815971 - 19816161
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTCCTATAAAT
Flanking Amino Acid:
KTKTYPPSGPTFKGNVPTYI
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
87
30
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.3
0.75
0.7
81.7
29.5
Minor 5ss
38.8
-1.3
2.8
50.6
39.2
Minor BPS
56
0.27
1.8
75.73
40.6

Associated Gene:

Gene:
ASAH1
Ensembl Gene ID:
ENSAPLG00000008114
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037478
19811217 - 19825313
14097
ENSAPLT00000008459
19806378 - 19825313
18936