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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19823563_19823777_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19823563 - 19823777
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
ACTTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
AGTAACAGAAGC
Flanking Amino Acid:
RSRTAALDIWDLDIKKGTWY
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
71.6
40.2
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
85.1
0.79
0.8
76.9
36.6
Minor 5ss
35.2
-1.7
2.8
39
40.2
Minor BPS
40
-0.7
2
49.94
39.3

Associated Gene:

Gene:
ASAH1
Ensembl Gene ID:
ENSAPLG00000008114
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037478
19811217 - 19825313
14097
ENSAPLT00000008459
19806378 - 19825313
18936