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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19823902_19824409_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19823902 - 19824409
Intron Length:
508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACATC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TAGCCATTAACA
Flanking Amino Acid:
MKCLNQTTQENISLPTIYDV
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
78.6
35.9
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
89.4
0.89
0.6
87.9
22.1
Minor 5ss
43.3
-0.7
3
60.2
44.5
Minor BPS
64.7
0.46
1.6
71.83
39.4

Associated Gene:

Gene:
ASAH1
Ensembl Gene ID:
ENSAPLG00000008114
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037478
19811217 - 19825313
14097
ENSAPLT00000008459
19806378 - 19825313
18936