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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19837827_19839102_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19837827 - 19839102
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTTTATC
5'SS Class:
major
3'SS Sequence:
GACACCATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TGATTTCCAATT
Flanking Amino Acid:
EVNQLFDVFTETFRCTYCNT
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
75.9
33.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
64
0.32
1
55
39.6
Minor 5ss
41
-1
2.7
54
43.3
Minor BPS
47.5
-0.1
1.8
66.15
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008425
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008747
19837365 - 19840786
3422