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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19839305_19839780_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19839305 - 19839780
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAACA
5'SS Class:
major
3'SS Sequence:
ACATTTTGTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTGTCCAAAATG
Flanking Amino Acid:
QPTEIPELSESFDQKTCSSM
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
69.4
34.6
Major BPS
75.8
0.64
1
65.8
41
Major PPT
75.1
0.57
1
73.2
41.2
Minor 5ss
39.2
-1.2
2.9
50
46
Minor BPS
52.2
-0
2
63.96
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008425
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008747
19837365 - 19840786
3422