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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19840008_19840397_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19840008 - 19840397
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTATGTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
AACTATTGAAAC
Flanking Amino Acid:
GATTVTNNIAGVSASEETEE
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
68.3
0.41
1
67.5
43
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
46.7
-0.2
1.7
53.37
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008425
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008747
19837365 - 19840786
3422