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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19845967_19847166_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19845967 - 19847166
Intron Length:
1200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TCTTATTTTACA
Flanking Amino Acid:
VGDAQTLKEPETFGVQSV*
Intron Amino Acid Position:
2027

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
82.5
37
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
88.9
0.87
0.7
83.5
31.2
Minor 5ss
36.8
-1.5
3.6
56.4
48
Minor BPS
58.9
0.27
1.8
71.98
40

Associated Gene:

Gene:
PCM1
Ensembl Gene ID:
ENSAPLG00000008474
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008891
19845623 - 19882739
37117
ENSAPLT00000043835
19845623 - 19882739
37117
ENSAPLT00000037827
19845623 - 19882739
37117
ENSAPLT00000035925
19845623 - 19882739
37117
ENSAPLT00000033728
19845623 - 19882739
37117
ENSAPLT00000045600
19845623 - 19882739
37117