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Intron Name: Anas_platyrhynchos_platyrhynchos_4_19849978_19850756_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19849978 - 19850756

Intron Length:

779

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

GATTTACGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TTTATGTTGATT

Flanking Amino Acid:

EESESAPVAISLSKAETQAL

Intron Amino Acid Position:

1795

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

81.6

29.9

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

66.6

0.37

63.6

42.8

Minor 5ss

-1.5

3.3

50.9

39.6

Minor BPS

54.3

0.22

2.1

78.91

37.7

Associated Gene:

Gene:

PCM1

Ensembl Gene ID:

ENSAPLG00000008474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037827

19845623 - 19882739

37117

ENSAPLT00000035925

19845623 - 19882739

37117

ENSAPLT00000046825

19839698 - 19882739

43042

ENSAPLT00000033728

19845623 - 19882739

37117

ENSAPLT00000045600

19845623 - 19882739

37117

ENSAPLT00000008891

19845623 - 19882739

37117

ENSAPLT00000043835

19845623 - 19882739

37117