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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19852423_19854101_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19852423 - 19854101
Intron Length:
1679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TAGAATTGAAGA
Flanking Amino Acid:
TEEIQSYAKEAKKGLQVDVC
Intron Amino Acid Position:
1729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
77.9
0.63
0.9
70.2
41.3
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
43.6
-0.4
1.8
51.15
40

Associated Gene:

Gene:
PCM1
Ensembl Gene ID:
ENSAPLG00000008474
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008891
19845623 - 19882739
37117
ENSAPLT00000045600
19845623 - 19882739
37117
ENSAPLT00000037827
19845623 - 19882739
37117
ENSAPLT00000035925
19845623 - 19882739
37117
ENSAPLT00000033728
19845623 - 19882739
37117
ENSAPLT00000046825
19839698 - 19882739
43042