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Intron Name: Anas_platyrhynchos_platyrhynchos_4_19856278_19856989_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19856278 - 19856989

Intron Length:

712

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGGATG

5'SS Class:

strong_major

3'SS Sequence:

CTATTTTAACAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAA

U12 Branch Point Sequence:

TCTATTTTAACA

Flanking Amino Acid:

HFEPFATDDLGPSTSECLSA

Intron Amino Acid Position:

1547

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.74

73.4

43.3

Major BPS

78.5

0.71

0.9

69.7

37.1

Major PPT

60.8

0.24

1.2

61.6

42.7

Minor 5ss

35.4

-1.7

3.2

40.5

45.5

Minor BPS

71.3

0.66

1.2

75.15

36.6

Associated Gene:

Gene:

PCM1

Ensembl Gene ID:

ENSAPLG00000008474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035925

19845623 - 19882739

37117