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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19858117_19859271_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19858117 - 19859271
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCAT
5'SS Class:
major
3'SS Sequence:
TTTTCTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
ATGTCAAGAACT
Flanking Amino Acid:
SNRNACIEVPETGSDLSMFE
Intron Amino Acid Position:
1386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.5
39.9
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
90
0.9
0.6
84.8
23.1
Minor 5ss
32.5
-2
3.4
47.3
48.1
Minor BPS
49.5
0.04
2
74.13
41.8

Associated Gene:

Gene:
PCM1
Ensembl Gene ID:
ENSAPLG00000008474
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037827
19845623 - 19882739
37117
ENSAPLT00000008891
19845623 - 19882739
37117
ENSAPLT00000046825
19839698 - 19882739
43042
ENSAPLT00000045600
19845623 - 19882739
37117