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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19859329_19860117_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19859329 - 19860117
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTTT
5'SS Class:
major
3'SS Sequence:
CACTTTCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TTGTGTTTATCA
Flanking Amino Acid:
KYSRSTEMSSAHARRILQQS
Intron Amino Acid Position:
1367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74.1
36.8
Major BPS
78.3
0.7
1
80
32.1
Major PPT
79.1
0.65
0.8
72.5
32
Minor 5ss
48.8
-0.1
3.1
73.2
43.6
Minor BPS
55.1
0.16
2
70.54
42.4

Associated Gene:

Gene:
PCM1
Ensembl Gene ID:
ENSAPLG00000008474
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046825
19839698 - 19882739
43042
ENSAPLT00000045600
19845623 - 19882739
37117
ENSAPLT00000037827
19845623 - 19882739
37117
ENSAPLT00000008891
19845623 - 19882739
37117