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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19861995_19863090_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19861995 - 19863090
Intron Length:
1096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTACTTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTCTCGTTTACT
Flanking Amino Acid:
GFTNFSPFVPGINYIPVFPS
Intron Amino Acid Position:
1137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
75
0.56
0.8
69.9
36.2
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
59.6
0.38
2.4
84.03
42.9

Associated Gene:

Gene:
PCM1
Ensembl Gene ID:
ENSAPLG00000008474
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037827
19845623 - 19882739
37117
ENSAPLT00000035925
19845623 - 19882739
37117
ENSAPLT00000046825
19839698 - 19882739
43042
ENSAPLT00000033728
19845623 - 19882739
37117
ENSAPLT00000045600
19845623 - 19882739
37117
ENSAPLT00000008891
19845623 - 19882739
37117
ENSAPLT00000043835
19845623 - 19882739
37117