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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19870375_19871100_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19870375 - 19871100
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTATCATA
5'SS Class:
major
3'SS Sequence:
CATTTTACCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGCATTTTACCC
Flanking Amino Acid:
HGDPQPVTNIRNPQGITSWS
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.2
72
39.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
70.8
0.47
0.8
63.3
37.9
Minor 5ss
39.4
-1.2
2.8
49.9
45.9
Minor BPS
49.8
-0
1.6
58.71
40.7

Associated Gene:

Gene:
PCM1
Ensembl Gene ID:
ENSAPLG00000008474
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035925
19845623 - 19882739
37117
ENSAPLT00000046825
19839698 - 19882739
43042
ENSAPLT00000033728
19845623 - 19882739
37117
ENSAPLT00000045600
19845623 - 19882739
37117
ENSAPLT00000008891
19845623 - 19882739
37117
ENSAPLT00000043835
19845623 - 19882739
37117
ENSAPLT00000037827
19845623 - 19882739
37117