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Intron Name: Anas_platyrhynchos_platyrhynchos_4_19871278_19871560_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19871278 - 19871560

Intron Length:

283

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAAAGTT

5'SS Class:

major

3'SS Sequence:

TTTTTCTCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAATAT

U12 Branch Point Sequence:

GTTTAGTTAATA

Flanking Amino Acid:

DDNLNPTEKLQKLNEVRKRL

Intron Amino Acid Position:

497

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.6

0.34

1.1

66.4

37.6

Major BPS

67.5

0.44

1.1

63.7

42.3

Major PPT

89.7

0.89

0.6

89.1

19.9

Minor 5ss

37.9

-1.4

3.7

61.3

44.3

Minor BPS

56.4

0.2

2.2

73.11

38.8

Associated Gene:

Gene:

PCM1

Ensembl Gene ID:

ENSAPLG00000008474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037827

19845623 - 19882739

37117

ENSAPLT00000035925

19845623 - 19882739

37117

ENSAPLT00000046825

19839698 - 19882739

43042

ENSAPLT00000033728

19845623 - 19882739

37117

ENSAPLT00000045600

19845623 - 19882739

37117

ENSAPLT00000008891

19845623 - 19882739

37117

ENSAPLT00000043835

19845623 - 19882739

37117