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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19873197_19873622_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19873197 - 19873622
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTACTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
GTACTTTGAATA
Flanking Amino Acid:
RFHNQLHDSQTQSVPDNRRQ
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.2
81.4
33.4
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
82.6
0.73
0.7
81.5
30.2
Minor 5ss
38.3
-1.3
2.8
51.3
45.1
Minor BPS
51.2
0.03
1.3
58.99
34.2

Associated Gene:

Gene:
PCM1
Ensembl Gene ID:
ENSAPLG00000008474
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035925
19845623 - 19882739
37117
ENSAPLT00000046825
19839698 - 19882739
43042
ENSAPLT00000033728
19845623 - 19882739
37117
ENSAPLT00000045600
19845623 - 19882739
37117
ENSAPLT00000008891
19845623 - 19882739
37117
ENSAPLT00000043835
19845623 - 19882739
37117
ENSAPLT00000037827
19845623 - 19882739
37117