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Intron Name: Anas_platyrhynchos_platyrhynchos_4_19876298_19879606_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19876298 - 19879606

Intron Length:

3309

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCTGC

5'SS Class:

strong_major

3'SS Sequence:

CTGTATCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTAAAT

U12 Branch Point Sequence:

TCTTCTGTATCT

Flanking Amino Acid:

DVQSEASDTMARDPQQEAKE

Intron Amino Acid Position:

302

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

65.8

Major BPS

58.4

0.21

1.2

38.7

Major PPT

80.4

0.69

0.9

77.2

36.8

Minor 5ss

44.3

-0.6

2.9

43.7

Minor BPS

54.2

0.21

2.3

79.06

43.7

Associated Gene:

Gene:

PCM1

Ensembl Gene ID:

ENSAPLG00000008474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043835

19845623 - 19882739

37117

ENSAPLT00000035925

19845623 - 19882739

37117

ENSAPLT00000033728

19845623 - 19882739

37117

ENSAPLT00000045600

19845623 - 19882739

37117