Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19876298_19879908_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19876298 - 19879908

Intron Length:

3611

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTAAGTTTG

5'SS Class:

major

3'SS Sequence:

CTGTATCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTAAAT

U12 Branch Point Sequence:

TCTTCTGTATCT

Flanking Amino Acid:

SYLKFLQKMLARDPQQEAKE

Intron Amino Acid Position:

263

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

1.1

73.5

37.9

Major BPS

58.4

0.21

1.2

38.7

Major PPT

80.4

0.69

0.9

77.2

36.8

Minor 5ss

46.4

-0.4

2.8

64.2

41.3

Minor BPS

54.2

0.21

2.3

79.06

43.7

Associated Gene:

Gene:

PCM1

Ensembl Gene ID:

ENSAPLG00000008474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008891

19845623 - 19882739

37117

ENSAPLT00000046825

19839698 - 19882739

43042