Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19880080_19880644_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19880080 - 19880644

Intron Length:

565

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTTGCT

5'SS Class:

major

3'SS Sequence:

AGTGTCTTTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAG

U12 Branch Point Sequence:

CATTCAGTAATT

Flanking Amino Acid:

RGEPAMDSSQIVSRLVQIRD

Intron Amino Acid Position:

206

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.63

1.1

71.8

Major BPS

67.2

0.43

1.5

77.4

37.3

Major PPT

76.9

0.6

0.9

69.1

41.3

Minor 5ss

34.3

-1.8

3.4

45.4

Minor BPS

50.8

0.1

2.3

74.1

42.9

Associated Gene:

Gene:

PCM1

Ensembl Gene ID:

ENSAPLG00000008474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035925

19845623 - 19882739

37117

ENSAPLT00000033728

19845623 - 19882739

37117

ENSAPLT00000046825

19839698 - 19882739

43042

ENSAPLT00000008891

19845623 - 19882739

37117

ENSAPLT00000045600

19845623 - 19882739

37117

ENSAPLT00000043835

19845623 - 19882739

37117