About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19880918_19881941_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19880918 - 19881941
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGTG
5'SS Class:
major
3'SS Sequence:
TGTTTGTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TGTTTGTTTATA
Flanking Amino Acid:
QRINFSDLDQRSIGSDSQGR
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
70
40.5
Major BPS
62
0.3
1
62.3
30.4
Major PPT
81.7
0.71
0.8
76.5
37.7
Minor 5ss
38.7
-1.3
3
49.5
46.8
Minor BPS
48.6
-0.1
2.3
67.04
39.5

Associated Gene:

Gene:
PCM1
Ensembl Gene ID:
ENSAPLG00000008474
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035925
19845623 - 19882739
37117
ENSAPLT00000046825
19839698 - 19882739
43042
ENSAPLT00000033728
19845623 - 19882739
37117
ENSAPLT00000045600
19845623 - 19882739
37117
ENSAPLT00000008891
19845623 - 19882739
37117
ENSAPLT00000043835
19845623 - 19882739
37117
ENSAPLT00000037827
19845623 - 19882739
37117