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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19882188_19882620_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19882188 - 19882620
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATATTTC
5'SS Class:
weak_major
3'SS Sequence:
CCTTTGCCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTCCTTTCATT
Flanking Amino Acid:
ESLDDRLNNTDWGSQQKKAN
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
68.6
37.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
68.9
0.43
1
71.7
33.3
Minor 5ss
52.5
0.09
2.5
69.9
41.1
Minor BPS
59.3
0.37
1.8
76.64
40.8

Associated Gene:

Gene:
PCM1
Ensembl Gene ID:
ENSAPLG00000008474
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035925
19845623 - 19882739
37117
ENSAPLT00000046825
19839698 - 19882739
43042
ENSAPLT00000033728
19845623 - 19882739
37117
ENSAPLT00000045600
19845623 - 19882739
37117
ENSAPLT00000008891
19845623 - 19882739
37117
ENSAPLT00000043835
19845623 - 19882739
37117
ENSAPLT00000037827
19845623 - 19882739
37117