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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19893484_19898620_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
19893484 - 19898620
Intron Length:
5137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTACTTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTCCCTCTACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.8
0.63
0.8
72.3
32
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
58.6
0.35
1.9
79.53
41.7

Associated Gene:

Gene:
FGL1
Ensembl Gene ID:
ENSAPLG00000009401
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031040
19892915 - 19915867
22953