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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19962932_19964555_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19962932 - 19964555
Intron Length:
1624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAA
Flanking Amino Acid:
ETFDLCSVPVMSSVKDGTAE
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.3
0.48
1
67.6
41.7
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
66.3
0.51
1.5
75.65
35.9

Associated Gene:

Gene:
MTUS1
Ensembl Gene ID:
ENSAPLG00000009766
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022729
19960700 - 20044293
83594