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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19964746_19976714_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19964746 - 19976714
Intron Length:
11969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTTCTCACCT
Flanking Amino Acid:
QKGTVLSSSSGVGSSPREKH
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
69.6
36.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
72.8
0.51
0.9
68.4
32
Minor 5ss
31.4
-2.1
3.1
36.2
41.7
Minor BPS
59.1
0.37
1.9
79.4
43

Associated Gene:

Gene:
MTUS1
Ensembl Gene ID:
ENSAPLG00000009766
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022729
19960700 - 20044293
83594