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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19978449_19979792_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
19978449 - 19979792
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGTTTCTT
5'SS Class:
weak_major
3'SS Sequence:
CAGAAAAGTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTTTTAGAAACT
Flanking Amino Acid:
LASFTGKRSRLTVSELMLS*
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.7
0.11
1.1
58.1
40.2
Major BPS
70
0.5
1
67
39.8
Major PPT
41.7
-0.4
1.7
36.8
43.5
Minor 5ss
43.4
-0.7
3
64.3
41.3
Minor BPS
48.2
-0
2.5
80.31
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028609
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039974
19978252 - 19979820
1569